高级检索
当前位置: 首页 > 详情页

OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancers

文献详情

资源类型:
WOS体系:
Pubmed体系:

收录情况: ◇ SCIE

单位: [1]Huazhong Univ Sci & Technol,Tongji Hosp,Tongji Med Coll,Dept Urol,Wuhan 430030,Peoples R China [2]Inst Urol Hubei Prov, Wuhan 430030, Peoples R China [3]Huazhong Univ Sci & Technol, Tongji Med Coll, Sch Publ Hlth, Dept Epidemiol & Biostat, Wuhan 430030, Peoples R China [4]Nanchang Univ, Affiliated Hosp 1, Dept Urol, Nanchang 330000, Jiangxi, Peoples R China [5]Zhejiang Univ, Affiliated Hosp 1, Sch Med, Dept Urol, Hangzhou 310000, Peoples R China [6]Kunming Med Univ, Affiliated Hosp 2, Dept Urol, Kunming 650000, Yunnan, Peoples R China [7]Hubei Engn Res Ctr, Canc Precis Diag & Treatment & Translat Med, Wuhan 430030, Peoples R China [8]Wuhan Univ, Zhongnan Hosp, Dept Biol Repositories, Wuhan 430030, Peoples R China [9]Wuhan Univ, Zhongnan Hosp, Dept Urol, Wuhan 430030, Peoples R China
出处:
ISSN:

摘要:
Alternative splicing (AS) represents a crucial method in mRNA level to regulate gene expression and contributes to the protein complexity. Abnormal splicing has been reported to play roles in several diseases, including cancers. We developed the OncoSplicing database for visualization of survival-associated and differential alternative splicing in 2019. Here, we provide an updated version of OncoSplicing for an integrative view of clinically relevant alternative splicing based on 122 423 AS events across 33 cancers in the TCGA SpliceSeq project and 238 558 AS events across 32 cancers in the TCGA SplAdder project. The new version of the database contains several useful features, such as annotation of alternative splicing-associated transcripts, survival analysis based on median and optimal cut-offs, differential analysis between TCGA tumour samples and adjacent normal samples or GTEx normal samples, pan-cancer views of alternative splicing, splicing differences and results of Cox'PH regression, identification of clinical indicator-relevant and cancer-specific splicing events, and downloadable splicing data in the SplAdder project. Overall, the substantially updated version of OncoSplicing (www.oncosplicing.com) is a user-friendly and registration-free database for browsing and searching clinically relevant alternative splicing in human cancers.

基金:
语种:
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2021]版:
大类 | 2 区 生物学
小类 | 2 区 生化与分子生物学
最新[2025]版:
大类 | 2 区 生物学
小类 | 2 区 生化与分子生物学
JCR分区:
出版当年[2020]版:
Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
最新[2024]版:
Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY

影响因子: 最新[2024版] 最新五年平均 出版当年[2020版] 出版当年五年平均 出版前一年[2019版] 出版后一年[2021版]

第一作者:
第一作者单位: [1]Huazhong Univ Sci & Technol,Tongji Hosp,Tongji Med Coll,Dept Urol,Wuhan 430030,Peoples R China [2]Inst Urol Hubei Prov, Wuhan 430030, Peoples R China
通讯作者:
通讯机构: [2]Inst Urol Hubei Prov, Wuhan 430030, Peoples R China [7]Hubei Engn Res Ctr, Canc Precis Diag & Treatment & Translat Med, Wuhan 430030, Peoples R China [8]Wuhan Univ, Zhongnan Hosp, Dept Biol Repositories, Wuhan 430030, Peoples R China [9]Wuhan Univ, Zhongnan Hosp, Dept Urol, Wuhan 430030, Peoples R China
推荐引用方式(GB/T 7714):
APA:
MLA:

资源点击量:898 今日访问量:0 总访问量:635 更新日期:2025-12-01 建议使用谷歌、火狐浏览器 常见问题

版权所有:重庆聚合科技有限公司 渝ICP备12007440号-3 地址:重庆市两江新区泰山大道西段8号坤恩国际商务中心16层(401121)