单位:[1]Huangshi Hubei Med Grp Maternal & Child Hlth Hosp, Wuhan, Hubei, Peoples R China[2]Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Geriatr, Wuhan, Peoples R China综合医疗科华中科技大学同济医学院附属同济医院[3]Sinopharm Genom Technol Co Ltd, Wuhan, Peoples R China[4]Julei Technol Co, Dept Artificial Intelligence, Wuhan, Peoples R China[5]Huazhong Univ Sci & Technol, Inst Reprod Hlth, Tongji Med Coll, Wuhan, Peoples R China[6]Capital Med Univ, Beijing Chao Yang Hosp, Dept Ophthalmol, Beijing, Peoples R China北京朝阳医院[7]Capital Med Univ, Beijing Chao Yang Hosp, Med Res Ctr, Beijing, Peoples R China北京朝阳医院
Background. The most numerous cells in the tumor microenvironment, cancer-associated fibroblasts (CAFs) play a crucial role in cancer development. Our objective was to develop a cancer-associated fibroblast breast cancer predictive model. Methods. We acquire breast cancer (BC) scRNA-seq data from Gene Expression Omnibus (GEO), and "Seurat" was used for data processing, including quality control, filtering, principal component analysis, and t-SNE. Afterward, "singleR" software was used to annotate cells. Seurat's "FindAllMarkers" program is used to locate particular CAF markers. clusterProfiler was used to analyze Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment. The Cancer Genome Atlas (TCGA) database was utilized to provide univariate Cox regression, least absolute shrinkage operator (LASSO) analysis using bulk RNA-seq data. For model development, multivariate Cox regression studies are used. Utilizing pRRophetic and Tumor Immune Dysfunction and Exclusion (TIDE) algorithms, chemosensitivity and immunotherapy response were predicted. The "rms" software was used to facilitate and simplify modeling. Results. Integrating the scRNA-seq (GSE176078) dataset yielded 28 cell clusters. In addition, well-known cell types helped identify 12 cell types. We found 193 marker genes that are elevated in CAFs. In addition, a five-gene predictive model associated to CAF was created in the training set. In the training set, the validation set, and the external validation set, greater risk scores were associated with a worse prognosis. And individuals with a higher risk score were more susceptible to immunotherapy and conventional chemotherapy medicines. Conclusion. In conclusion, we establish a strong prognostic model comprised of 5 genes related with CAF that might serve as a potent prognostic indicator and aid clinicians in making more rational medication choices.
基金:
[32000485]
语种:
外文
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2021]版:
大类|3 区生物学
小类|3 区生物工程与应用微生物4 区医学:研究与实验
最新[2025]版:
大类|4 区医学
小类|4 区生物工程与应用微生物4 区医学:研究与实验
JCR分区:
出版当年[2020]版:
Q2BIOTECHNOLOGY & APPLIED MICROBIOLOGYQ3MEDICINE, RESEARCH & EXPERIMENTAL
最新[2024]版:
Q3BIOTECHNOLOGY & APPLIED MICROBIOLOGYQ3MEDICINE, RESEARCH & EXPERIMENTAL
第一作者单位:[1]Huangshi Hubei Med Grp Maternal & Child Hlth Hosp, Wuhan, Hubei, Peoples R China
通讯作者:
通讯机构:[6]Capital Med Univ, Beijing Chao Yang Hosp, Dept Ophthalmol, Beijing, Peoples R China[7]Capital Med Univ, Beijing Chao Yang Hosp, Med Res Ctr, Beijing, Peoples R China
推荐引用方式(GB/T 7714):
Hu Jing,Jiang Yueqiang,Wei Qihao,et al.Development of a Cancer-Associated Fibroblast-Related Prognostic Model in Breast Cancer via Bulk and Single-Cell RNA Sequencing[J].BIOMED RESEARCH INTERNATIONAL.2022,2022:doi:10.1155/2022/2955359.
APA:
Hu, Jing,Jiang, Yueqiang,Wei, Qihao,Li, Bin,Xu, Sha...&Huang, Xuan.(2022).Development of a Cancer-Associated Fibroblast-Related Prognostic Model in Breast Cancer via Bulk and Single-Cell RNA Sequencing.BIOMED RESEARCH INTERNATIONAL,2022,
MLA:
Hu, Jing,et al."Development of a Cancer-Associated Fibroblast-Related Prognostic Model in Breast Cancer via Bulk and Single-Cell RNA Sequencing".BIOMED RESEARCH INTERNATIONAL 2022.(2022)