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Identification and validation of genetic signature associated with aging in chronic obstructive pulmonary disease

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单位: [1]Huazhong Univ Sci & Technol,Tongji Hosp,Key Lab Pulm Dis,Natl Clin Res Ctr Resp Dis,Dept Resp & Crit Care M,Wuhan 430030,Hubei,Peoples R China [2]Western Univ, Dept Sci, London, ON N6A 3K7, Canada [3]Wuhan Hosp Tradit Chinese & Western Med, Wuhan Hosp 1, Dept Resp & Crit Care Med, Wuhan 430022, Peoples R China [4]Huazhong Univ Sci & Technol,Tongji Hosp,Tongji Med Coll,Hlth Management Ctr,Wuhan 430030,Hubei,Peoples R China
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关键词: chronic obstructive pulmonary disease aging bioinformatics analysis genetic signature

摘要:
Aging plays an essential role in the development for chronic obstructive pulmonary disease (COPD). The aim of this study was to identify and validate the potential aging-related genes of COPD through bioinformatics analysis and experimental validation. Firstly, we compared the gene expression profiles of aged and young COPD patients using two datasets (GSE76925 and GSE47460) from Gene Expression Omnibus (GEO), and identified 244 aging-related different expressed genes (DEGs), with 132 up-regulated and 112 down-regulated. Then, by analyzing the data for cigarette smoke-induced COPD mouse model (GSE125521), a total of 783 DEGs were identified between aged and young COPD mice, with 402 genes increased and 381 genes decreased. Additionally, functional enrichment analysis revealed that these DEGs were actively involved in COPD-related biological processes and function pathways. Meanwhile, six genes were identified as the core aging-related genes in COPD after combining the human DEGs and mouse DEGs. Eventually, five out of six core genes were validated to be up-regulated in the lung tissues collected from aged COPD patients than young COPD patients, namely NKG7, CKLF, LRP4, GDPD3 and CXCL9. Thereinto, the expressions of NKG7 and CKLF were negatively associated with lung function. These results may expand the understanding for aging in COPD.

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出版当年[2021]版:
大类 | 3 区 医学
小类 | 3 区 细胞生物学 3 区 老年医学
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出版当年[2020]版:
Q1 GERIATRICS & GERONTOLOGY Q2 CELL BIOLOGY
最新[2023]版:
Q2 CELL BIOLOGY Q2 GERIATRICS & GERONTOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2020版] 出版当年五年平均 出版前一年[2019版] 出版后一年[2021版]

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第一作者单位: [1]Huazhong Univ Sci & Technol,Tongji Hosp,Key Lab Pulm Dis,Natl Clin Res Ctr Resp Dis,Dept Resp & Crit Care M,Wuhan 430030,Hubei,Peoples R China
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